Skip to content
@marbl

MarBL

Maryland Bioinformatics Labs

Popular repositories Loading

  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    1.1k 106

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 708 181

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 502 109

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 454 97

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 421 34

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 354 25

Repositories

Showing 10 of 47 repositories
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility's past year of commit activity
    C 1 4 0 0 Updated Oct 10, 2026
  • MetagenomeScope Public

    Visualization tool for (meta)genome assembly graphs

    marbl/MetagenomeScope's past year of commit activity
    Python 50 GPL-3.0 10 171 0 Updated Oct 9, 2026
  • verkko-fillet Public

    Post-verkko graph and assembly curation in Python.

    marbl/verkko-fillet's past year of commit activity
    Jupyter Notebook 37 MIT 1 9 0 Updated Oct 9, 2026
  • GQC Public

    Python package for comparing genome assemblies and read data to the diploid Q100 benchmark

    marbl/GQC's past year of commit activity
    Python 21 3 1 0 Updated Oct 8, 2026
  • ModDotPlot-Browser Public

    Interactive ModDotPlot on the web browser

    marbl/ModDotPlot-Browser's past year of commit activity
    TypeScript 0 MIT-0 0 0 0 Updated Oct 6, 2026
  • ModDotPlot Public
    marbl/ModDotPlot's past year of commit activity
    Python 201 MIT 11 2 0 Updated Oct 5, 2026
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser's past year of commit activity
    HTML 33 3 0 0 Updated Oct 1, 2026
  • Pooch Public

    POOCH is a Snakemake-based pipeline for assigning chromosome labels and determining the parent of origin (maternal or paternal) of near-complete genome assemblies.

    marbl/Pooch's past year of commit activity
    Python 6 MIT 0 1 0 Updated Sep 27, 2026
  • gis-bulk-assembly Public

    Utility scripts to download/process/assemble/qc large collection of samples from AWS/FTP

    marbl/gis-bulk-assembly's past year of commit activity
    Perl 1 0 0 0 Updated Sep 17, 2026
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu's past year of commit activity
    C++ 708 181 3 2 Updated Sep 10, 2026
View all repositories

Most used topics

Loading…