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Segfault when testing test_reinitialize_module #203

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Segfault when testing test_reinitialize_module#203

Description

@mweinelt
mweinelt
opened on Mar 6, 2022

With xmlsec 1.2.33, typing_extensions 4.1.1, mypy_extensions 0.4.3. Excluding test_xmlsec.py makes the remaining test work. Trying to pin-point the package update that broke this.

============================= test session starts ==============================
platform linux -- Python 3.9.10, pytest-7.0.1, pluggy-1.0.0
rootdir: /build/xmlsec-1.3.12
plugins: hypothesis-6.38.0
collected 165 items / 1 skipped / 164 selected                                 

tests/test_xmlsec.py Fatal Python error: Segmentation fault

Current thread 0x00007ffff7832b80 (most recent call first):
  File "/build/xmlsec-1.3.12/tests/test_xmlsec.py", line 14 in test_reinitialize_module
  File "/nix/store/4nc88s687709yzy8pz7k987fpzhfbj0f-python3-3.9.10/lib/python3.9/unittest/case.py", line 550 in _callTestMethod
  File "/nix/store/4nc88s687709yzy8pz7k987fpzhfbj0f-python3-3.9.10/lib/python3.9/unittest/case.py", line 592 in run
  File "/build/xmlsec-1.3.12/tests/base.py", line 57 in run
  File "/nix/store/4nc88s687709yzy8pz7k987fpzhfbj0f-python3-3.9.10/lib/python3.9/unittest/case.py", line 651 in __call__
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/unittest.py", line 327 in runtest
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 168 in pytest_runtest_call
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 261 in <lambda>
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 340 in from_call
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 260 in call_runtest_hook
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 221 in call_and_report
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 132 in runtestprotocol
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/main.py", line 347 in pytest_runtestloop
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/main.py", line 322 in _main
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/main.py", line 268 in wrap_session
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/main.py", line 315 in pytest_cmdline_main
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/nix/store/iwbyv0fk6sx0ihshpf0pw1ligp1qmdwg-python3.9-pluggy-1.0.0/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/config/__init__.py", line 165 in main
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/_pytest/config/__init__.py", line 188 in console_main
  File "/nix/store/6c9iqs6x50545pd3sg6qjbv01h8lwzaw-python3.9-pytest-7.0.1/lib/python3.9/site-packages/pytest/__main__.py", line 5 in <module>
  File "/nix/store/4nc88s687709yzy8pz7k987fpzhfbj0f-python3-3.9.10/lib/python3.9/runpy.py", line 87 in _run_code
  File "/nix/store/4nc88s687709yzy8pz7k987fpzhfbj0f-python3-3.9.10/lib/python3.9/runpy.py", line 197 in _run_module_as_main
/nix/store/jwmvl741k8md09cfhwf9bds380123vqv-pytest-check-hook/nix-support/setup-hook: line 53:   211 Segmentation fault      (core dumped) /nix/store/4nc88s687709yzy8pz7k987fpzhfbj0f-python3-3.9.10/bin/python3.9 -m pytest --ignore="tests/test_doc_examples.py" --deselect=tests/test_xmlsec.py::test_reinitialize_module
builder for '/nix/store/2zrv3w28bkrw010hq1720nxrsv625ryg-python3.9-xmlsec-1.3.12.drv' failed with exit code 139

Activity

  1. mweinelt commented on Mar 6, 2022

    @mweinelt
    mweinelt
    on Mar 6, 2022
    Author

    Seems to be related to the PyTest 7.0 update.

  2. andyrtr commented on Apr 22, 2026

    @andyrtr
    andyrtr
    on Apr 22, 2026

    I'm running into a very similar issue now:

    ============================= test session starts ==============================
platform linux -- Python 3.14.4, pytest-9.0.3, pluggy-1.6.0 -- /usr/bin/python
cachedir: .pytest_cache
hypothesis profile 'default'
rootdir: /build/python-xmlsec/src/python-xmlsec
configfile: pyproject.toml
plugins: hypothesis-6.152.1
collecting ... collected 290 items / 1 skipped

tests/test_xmlsec.py::TestModule::test_reinitialize_module Fatal Python error: Segmentation fault

Current thread 0x00007f38b1023b80 [pytest] (most recent call first):
  File "/build/python-xmlsec/src/python-xmlsec/tests/test_xmlsec.py", line 13 in test_reinitialize_module
  File "/usr/lib/python3.14/unittest/case.py", line 615 in _callTestMethod
  File "/usr/lib/python3.14/unittest/case.py", line 669 in run
  File "/build/python-xmlsec/src/python-xmlsec/tests/base.py", line 37 in run
  File "/usr/lib/python3.14/unittest/case.py", line 725 in __call__
  File "/usr/lib/python3.14/site-packages/_pytest/unittest.py", line 389 in runtest
  File "/usr/lib/python3.14/site-packages/_pytest/runner.py", line 179 in pytest_runtest_call
  File "/usr/lib/python3.14/site-packages/pluggy/_callers.py", line 121 in _multicall
  File "/usr/lib/python3.14/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.14/site-packages/pluggy/_hooks.py", line 512 in __call__
  File "/usr/lib/python3.14/site-packages/_pytest/runner.py", line 245 in <lambda>
  File "/usr/lib/python3.14/site-packages/_pytest/runner.py", line 353 in from_call
  File "/usr/lib/python3.14/site-packages/_pytest/runner.py", line 244 in call_and_report
  File "/usr/lib/python3.14/site-packages/_pytest/runner.py", line 137 in runtestprotocol
  File "/usr/lib/python3.14/site-packages/_pytest/runner.py", line 118 in pytest_runtest_protocol
  File "/usr/lib/python3.14/site-packages/pluggy/_callers.py", line 121 in _multicall
  File "/usr/lib/python3.14/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.14/site-packages/pluggy/_hooks.py", line 512 in __call__
  File "/usr/lib/python3.14/site-packages/_pytest/main.py", line 396 in pytest_runtestloop
  File "/usr/lib/python3.14/site-packages/pluggy/_callers.py", line 121 in _multicall
  File "/usr/lib/python3.14/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.14/site-packages/pluggy/_hooks.py", line 512 in __call__
  File "/usr/lib/python3.14/site-packages/_pytest/main.py", line 372 in _main
  File "/usr/lib/python3.14/site-packages/_pytest/main.py", line 318 in wrap_session
  File "/usr/lib/python3.14/site-packages/_pytest/main.py", line 365 in pytest_cmdline_main
  File "/usr/lib/python3.14/site-packages/pluggy/_callers.py", line 121 in _multicall
  File "/usr/lib/python3.14/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.14/site-packages/pluggy/_hooks.py", line 512 in __call__
  File "/usr/lib/python3.14/site-packages/_pytest/config/__init__.py", line 199 in main
  File "/usr/lib/python3.14/site-packages/_pytest/config/__init__.py", line 223 in console_main
  File "/usr/bin/pytest", line 8 in <module>

Current thread's C stack trace (most recent call first):
  Binary file "/usr/lib/libpython3.14.so.1.0", at _Py_DumpStack+0x4d [0x7f38b0b3a9ae]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x13b1f1 [0x7f38b0b3b1f1]
  Binary file "/usr/lib/libc.so.6", at +0x3e2d0 [0x7f38b063e2d0]
  Binary file "/usr/lib/libc.so.6", at __pthread_rwlock_rdlock+0x11 [0x7f38b069c531]
  Binary file "/usr/lib/libcrypto.so.3", at CRYPTO_THREAD_read_lock+0xe [0x7f38ae7a3c7e]
  Binary file "/usr/lib/libcrypto.so.3", at ERR_lib_error_string+0x67 [0x7f38ae73eca7]
  Binary file "/usr/lib/libcrypto.so.3", at +0x13fa65 [0x7f38ae73fa65]
  Binary file "/usr/lib/libxmlsec1-openssl.so", at xmlSecOpenSSLAppInit+0x8e [0x7f38adadfe6b]
  Binary file "/usr/lib/libxmlsec1.so.10311", at xmlSecCryptoAppInit+0x3a [0x7f38adc80840]
  Binary file "/build/python-xmlsec/src/python-xmlsec/test_dir/usr/lib/python3.14/site-packages/xmlsec.cpython-314-x86_64-linux-gnu.so", at +0xf46c [0x7f38aebec46c]
  Binary file "/build/python-xmlsec/src/python-xmlsec/test_dir/usr/lib/python3.14/site-packages/xmlsec.cpython-314-x86_64-linux-gnu.so", at +0xf4ca [0x7f38aebec4ca]
  Binary file "/usr/lib/libpython3.14.so.1.0", at PyObject_Vectorcall+0x5d [0x7f38b0b7261d]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyEval_EvalFrameDefault+0xaa17 [0x7f38b0b90187]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x1b54cc [0x7f38b0bb54cc]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x1fa0ee [0x7f38b0bfa0ee]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x282ad5 [0x7f38b0c82ad5]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyEval_EvalFrameDefault+0x464a [0x7f38b0b89dba]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x1816a5 [0x7f38b0b816a5]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x26d2fc [0x7f38b0c6d2fc]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x2cd413 [0x7f38b0ccd413]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyObject_MakeTpCall+0x46c [0x7f38b0b6fe0c]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyEval_EvalFrameDefault+0xebbc [0x7f38b0b9432c]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x1816a5 [0x7f38b0b816a5]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x26d2fc [0x7f38b0c6d2fc]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x2cd413 [0x7f38b0ccd413]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x282a3a [0x7f38b0c82a3a]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyEval_EvalFrameDefault+0x464a [0x7f38b0b89dba]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x1816a5 [0x7f38b0b816a5]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x26d2fc [0x7f38b0c6d2fc]
  Binary file "/usr/lib/libpython3.14.so.1.0", at +0x2cd413 [0x7f38b0ccd413]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyObject_MakeTpCall+0x46c [0x7f38b0b6fe0c]
  Binary file "/usr/lib/libpython3.14.so.1.0", at _PyEval_EvalFrameDefault+0xebbc [0x7f38b0b9432c]
  <truncated rest of calls>

Extension modules: lxml._elementpath, lxml.etree, xmlsec (total: 3)
/startdir/PKGBUILD: line 30:  1314 Segmentation fault         (core dumped) pytest -vv
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